ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Desulfovibrio
  • Desulfovibrio desulfuricans

Desulfovibrio desulfuricans (ATCC® 27774™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 27, 2019
Length2,874,481 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N502,873,432 nt
%GC58.07%
Organism Summary
NameATCC® 27774™
IsolationRumen of sheep
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS2,398
Number of Hypothetical Proteins1,088
Number of tRNA52
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count39,016
Oxford Nanopore Median Q Score16
Illumina Read Count5,420,932
Illumina Mean Coverage Depth395.376×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,420,932
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.41%
PassedEstimated genome contamination0%
PassedAverage depth of coverage395.376×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline