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  • Mycoplasma
  • Metamycoplasma orale

Metamycoplasma orale (ATCC® 23714™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedDecember 15, 2021
Length732,502 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N50732,502 nt
%GC25.34%
Organism Summary
NameATCC® 23714™
IsolationOropharynx
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS1,265
Number of Hypothetical Proteins806
Number of tRNA34
Number of 5s rRNA1
Number of 16s rRNA1
Number of 23s rRNA1
Input Reads Summary
Oxford Nanopore Read Count41,098
Oxford Nanopore Median Q Score25
Illumina Read Count20,356,982
Illumina Mean Coverage Depth3,843.868×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads20,356,982
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage3,843.868×
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