Organism Summary | |
---|---|
Catalog Number | ATCC® 33929™ |
Strain Alias | R374 |
Tags | Methylation Data |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | April 29, 2024 |
Length | 1,937,952 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 1 (All Circularized) |
N50 | 1,937,952 nt |
%GC | 38.26% |
Annotations Summary | |
---|---|
Number of CDS | 1848 |
Number of Hypothetical Proteins | 98 |
Number of tRNA | 57 |
Number of 5s rRNA | 7 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 6 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 96,403 |
Oxford Nanopore Median Q Score | 36 |
Illumina Read Count | 12,962,908 |
Illumina Mean Coverage Depth | 992.938× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 12,962,908 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.67% |
Estimated genome contamination | 0.22% |
Average depth of coverage | 992.938× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions