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  • Vibrio mimicus

Vibrio mimicus (ATCC® 33653™)

Overview
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Related Genomes
Quality Control
Assembly Summary
Date PublishedSeptember 30, 2022
Length4,412,219 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N502,972,033 nt
%GC46.33%
Organism Summary
NameATCC® 33653™
IsolationEar
TagsType Strain
Biosafety Level2
Type StrainYes
Annotations Summary
Number of CDS3,880
Number of Hypothetical Proteins1,499
Number of tRNA105
Number of 5s rRNA11
Number of 16s rRNA10
Number of 23s rRNA10
Input Reads Summary
Oxford Nanopore Read Count145,371
Oxford Nanopore Median Q Score24
Illumina Read Count5,911,788
Illumina Mean Coverage Depth179.226×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,911,788
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.16%
PassedAverage depth of coverage179.226×
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