Organism Summary | |
---|---|
Catalog Number | ATCC® 33736™ |
Strain Alias | U7W |
Isolation | Water from shower head |
Tags | Methylation Data |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | November 26, 2024 |
Length | 3,458,889 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (0 Circularized) |
N50 | 3,292,973 nt |
%GC | 38.19% |
Annotations Summary | |
---|---|
Number of CDS | 3047 |
Number of Hypothetical Proteins | 461 |
Number of tRNA | 43 |
Number of 5s rRNA | 3 |
Number of 16s rRNA | 3 |
Number of 23s rRNA | 3 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 93,114 |
Oxford Nanopore Median Q Score | 33 |
Illumina Read Count | 5,557,788 |
Illumina Mean Coverage Depth | 238.251× |
Illumina Median Q Score | 40 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 5,557,788 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 100% |
Estimated genome contamination | 0.38% |
Average depth of coverage | 238.251× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions