ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Pseudomonas putida group
  • Pseudomonas putida

Pseudomonas putida (ATCC® 47054™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedMay 14, 2019
Length6,185,012 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N506,185,012 nt
%GC61.52%
Organism Summary
NameATCC® 47054™
Genotypermo- mod+
Isolation
Biosafety Level1
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS5,650
Number of Hypothetical Proteins2,393
Number of tRNA82
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count26,877
Oxford Nanopore Median Q Score15
Illumina Read Count4,675,283
Illumina Mean Coverage Depth132.394×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,675,283
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.64%
PassedEstimated genome contamination0.22%
PassedAverage depth of coverage132.394×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline