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  • Desulfovibrio
  • Desulfovibrio piger

Desulfovibrio piger (ATCC® 29098™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedNovember 30, 2020
Length2,912,770 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N502,912,770 nt
%GC62.87%
Organism Summary
NameATCC® 29098™
IsolationFeces
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS2,529
Number of Hypothetical Proteins1,270
Number of tRNA75
Number of 5s rRNA7
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count149,274
Oxford Nanopore Median Q Score25
Illumina Read Count17,886,927
Illumina Mean Coverage Depth818.854×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads17,886,927
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.29%
PassedEstimated genome contamination0.59%
PassedAverage depth of coverage818.854×
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