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  • Staphylococcus
  • Staphylococcus epidermidis

Staphylococcus epidermidis (ATCC® 12228™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 27, 2019
Length2,575,951 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs7 (All Circularized)
Assembly LevelComplete
N502,503,245 nt
%GC32.07%
Organism Summary
NameATCC® 12228™
TagsMSA Component
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS2,348
Number of Hypothetical Proteins813
Number of tRNA60
Number of 5s rRNA7
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count3,655
Oxford Nanopore Median Q Score17
Illumina Read Count4,049,811
Illumina Mean Coverage Depth271.786×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,049,811
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.81%
PassedEstimated genome contamination0%
PassedAverage depth of coverage271.786×
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