ATCC® BAA-2685™ | Staphylococcus aureus

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	April 29, 2024
Length	2,797,465 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (0 Circularized)
N50	2,450,747 nt
%GC	32.87%

Organism Summary
Name	ATCC® BAA-2685™
Isolation	Patient with novel antibiotic resistance properties
Tags
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	2706
Number of Hypothetical Proteins	329
Number of tRNA	59
Number of 5s rRNA	6
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	329,016
Oxford Nanopore Median Q Score	38
Illumina Read Count	12,441,296
Illumina Mean Coverage Depth	657.462×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads12,441,296

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.51%

PassedEstimated genome contamination0.08%

PassedAverage depth of coverage657.462×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Staphylococcus aureus (ATCC® BAA-2685™)