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  • Streptococcus
  • Streptococcus oralis

Streptococcus oralis (ATCC® 6249™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 28, 2020
Length1,928,417 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (0 Circularized)
Assembly LevelChromosome
N501,818,524 nt
%GC41.29%
Organism Summary
NameATCC® 6249™
Genotype
IsolationHuman blood from a patient with septicemia and endocarditis
Biosafety Level2
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS1,744
Number of Hypothetical Proteins644
Number of tRNA59
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count151,949
Oxford Nanopore Median Q Score25
Illumina Read Count3,110,993
Illumina Mean Coverage Depth329.632×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads3,110,993
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.87%
PassedEstimated genome contamination0.2%
PassedAverage depth of coverage329.632×
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