ATCC® 700582™ | Staphylococcus lugdunensis

Overview

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Related Genomes

Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	2,586,281 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (All Circularized)
Assembly Level	None
N50	2,581,842 nt
%GC	33.77%

Organism Summary
Name	ATCC® 700582™
Isolation	Blood of patient with bacteremia
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	2,386
Number of Hypothetical Proteins	156
Number of tRNA	60
Number of 5s rRNA	7
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	184,987
Oxford Nanopore Median Q Score	36
Illumina Read Count	7,917,350
Illumina Mean Coverage Depth	452.414×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads7,917,350

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.03%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.61%

PassedEstimated genome contamination0%

PassedAverage depth of coverage452.414×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Staphylococcus lugdunensis (ATCC® 700582™)