ATCC® BAA-1374™ | Mycobacterium rutilum

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-1374™
Strain Alias	czh-107
Isolation	Soil; isolated January 2004
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	October 3, 2023
Length	6,272,981 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	7 (2 Circularized)
N50	3,154,968 nt
%GC	68.2%

Annotations Summary
Number of CDS	6092
Number of Hypothetical Proteins	802
Number of tRNA	46
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	111,884
Oxford Nanopore Median Q Score	13.3
Illumina Read Count	10,221,980
Illumina Mean Coverage Depth	240.395×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	10,221,980
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	100%
Estimated genome contamination	0.11%
Illumina depth of coverage	240.395×
ONT depth of coverage	124.479×

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions