ATCC® BAA-1413™ | Streptococcus pyogenes

Overview

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Related Genomes

Quality Control

Assembly Summary
Date Published	November 26, 2024
Length	1,931,457 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	1,931,457 nt
%GC	38.21%

Annotations Summary
Number of CDS	1830
Number of Hypothetical Proteins	155
Number of tRNA	67
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	305,341
Oxford Nanopore Median Q Score	35
Illumina Read Count	5,783,754
Illumina Mean Coverage Depth	442.512×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	5,783,754
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.85%
Estimated genome contamination	0%
Illumina depth of coverage	442.512×
ONT depth of coverage	441.461×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions