Organism Summary | |
---|---|
Catalog Number | ATCC® 29545™ |
Strain Alias | NCTC 11296 |
Isolation | Infraorbital sinus of chick |
Tags | Methylation DataType Strain |
Biosafety Level | 2 |
Type Strain | Yes |
Assembly Summary | |
---|---|
Date Published | December 21, 2020 |
Length | 2,813,586 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (1 Circularized) |
N50 | 2,218,113 nt |
%GC | 41.11% |
Annotations Summary | |
---|---|
Number of CDS | 2926 |
Number of Hypothetical Proteins | 436 |
Number of tRNA | 54 |
Number of 5s rRNA | 7 |
Number of 16s rRNA | 5 |
Number of 23s rRNA | 5 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 83,926 |
Oxford Nanopore Median Q Score | 27 |
Illumina Read Count | 4,153,593 |
Illumina Mean Coverage Depth | 254.941× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 4,153,593 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.09% |
Estimated genome contamination | 0.43% |
Average depth of coverage | 254.941× |