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Overview
Genome Browser
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 14374™ |
| Strain Alias | 5035 [R. Hugh 1513] |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | May 27, 2026 |
| Length | 4,050,339 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (1 Circularized) |
| N50 | 2,897,984 nt |
| %GC | 47.58% |
Annotations Summary | |
|---|---|
| Number of CDS | 3552 |
| Number of Hypothetical Proteins | 217 |
| Number of tRNA | 103 |
| Number of 5s rRNA | 10 |
| Number of 16s rRNA | 9 |
| Number of 23s rRNA | 9 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 343,089 |
| Oxford Nanopore Median Q Score | 40 |
| Illumina Read Count | 3,800,606 |
| Illumina Mean Coverage Depth | 237.81× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 3,800,606 |
| Median Q score, all bases | 40 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 98.97% |
| Estimated genome contamination | 1.43% |
| Illumina depth of coverage | 237.81× |
| ONT depth of coverage | 225.094× |
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v3.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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