ATCC® TSD-371™ | Streptococcus urinae

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® TSD-371™
Isolation	Human urine obtained via transurethral catheter
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	October 31, 2023
Length	2,037,904 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (All Circularized)
N50	2,033,096 nt
%GC	39.15%

Annotations Summary
Number of CDS	2075
Number of Hypothetical Proteins	226
Number of tRNA	60
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	706,172
Oxford Nanopore Median Q Score	27
Illumina Read Count	12,807,560
Illumina Mean Coverage Depth	930.918×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	12,807,560
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.88%
Estimated genome contamination	0.71%
Illumina depth of coverage	930.918×
ONT depth of coverage	1,417.292×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions