ATCC® 15722™ | Streptomyces olivaceiscleroticus | ATCC Genome Portal

Overview

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Quality Control

Assembly Summary
Date Published	April 10, 2024
Length	8,793,394 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	13 (1 Circularized)
Assembly Level	Chromosome
N50	1,695,208 nt
%GC	71.52%

Organism Summary
Name	ATCC® 15722™
Tags	Type Strain
Biosafety Level	1
Type Strain	Yes

Annotations Summary
Number of CDS	7,740
Number of Hypothetical Proteins	1,204
Number of tRNA	69
Number of 5s rRNA	6
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	1,077,387
Oxford Nanopore Median Q Score	30
Illumina Read Count	9,609,614
Illumina Mean Coverage Depth	159.953×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads9,609,614

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.02%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.64%

PassedEstimated genome contamination3.01%

PassedAverage depth of coverage159.953×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions