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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 13125™ |
| Strain Alias | [IFO 12017, LMG 10339, NCIB 9290, HIM 762-3] |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | September 3, 2019 |
| Length | 5,168,085 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 5,168,085 nt |
| %GC | 42.05% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4222 |
| Number of Hypothetical Proteins | 549 |
| Number of tRNA | 46 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 84,844 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 3,429,720 |
| Illumina Mean Coverage Depth | 127.84× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 3,429,720 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0.48% |
| Illumina depth of coverage | 127.84× |
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