Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 43498™ |
| Strain Alias | S2 |
| Isolation | Sputum; Dept. of Health and Environmental Control |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | April 2, 2021 |
| Length | 4,013,973 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (3 Circularized) |
| N50 | 3,863,546 nt |
| %GC | 39.19% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3716 |
| Number of Hypothetical Proteins | 509 |
| Number of tRNA | 74 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 109,666 |
| Oxford Nanopore Median Q Score | 27 |
| Illumina Read Count | 15,873,587 |
| Illumina Mean Coverage Depth | 540.674× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 15,873,587 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0% |
| Illumina depth of coverage | 540.674× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline