ATCC® 146™ | Staphylococcus capitis

Overview

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Quality Control

Assembly Summary
Date Published	June 10, 2025
Length	2,938,838 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	13 (4 Circularized)
N50	2,179,712 nt
%GC	32.91%

Annotations Summary
Number of CDS	2835
Number of Hypothetical Proteins	297
Number of tRNA	66
Number of 5s rRNA	7
Number of 16s rRNA	6
Number of 23s rRNA	6

Input Reads Summary
Oxford Nanopore Read Count	79,611
Oxford Nanopore Median Q Score	26
Illumina Read Count	13,413,896
Illumina Mean Coverage Depth	665.716×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	13,413,896
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.47%
Estimated genome contamination	4.71%
Illumina depth of coverage	665.716×
ONT depth of coverage	255.328×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions