ATCC® 19529™ | Mycobacterium thermoresistibile

Overview

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Quality Control

Assembly Summary
Date Published	November 30, 2023
Length	4,819,396 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (All Circularized)
N50	4,701,227 nt
%GC	68.91%

Annotations Summary
Number of CDS	4555
Number of Hypothetical Proteins	546
Number of tRNA	45
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	268,464
Oxford Nanopore Median Q Score	26
Illumina Read Count	11,716,668
Illumina Mean Coverage Depth	342.397×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	11,716,668
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.05%
Estimated genome contamination	0.82%
Illumina depth of coverage	342.397×
ONT depth of coverage	416.044×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions