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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 14511™ |
| Strain Alias | Fukunaga 2A-327 [CBS 714.72, IFO 13413, ISP 5499, RIA 1374] |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2021 |
| Length | 10,696,378 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 10 (0 Circularized) |
| N50 | 2,563,283 nt |
| %GC | 70.78% |
| Annotations Summary | |
|---|---|
| Number of CDS | 9644 |
| Number of Hypothetical Proteins | 1654 |
| Number of tRNA | 81 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 398,235 |
| Oxford Nanopore Median Q Score | 21 |
| Illumina Read Count | 13,964,527 |
| Illumina Mean Coverage Depth | 169.03× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 13,964,527 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.46% |
| Estimated genome contamination | 1.29% |
| Average depth of coverage | 169.03× |
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