ATCC® BAA-1410™ | Streptococcus pneumoniae

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-1410™
Strain Alias	58555
Isolation	Respiratory specimen; isolated January 20, 2005
Tags	Methylation Data
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	October 3, 2023
Length	2,086,779 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	21 (0 Circularized)
N50	265,300 nt
%GC	39.59%

Annotations Summary
Number of CDS	2119
Number of Hypothetical Proteins	201
Number of tRNA	22
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	1,042,475
Oxford Nanopore Median Q Score	13.9
Illumina Read Count	8,522,924
Illumina Mean Coverage Depth	605.098×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	8,522,924
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.6%
Estimated genome contamination	0.21%
Illumina depth of coverage	605.098×
ONT depth of coverage	1,481.82×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions