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  • Streptococcus
  • Streptococcus pneumoniae

Streptococcus pneumoniae (ATCC® BAA-341™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedJanuary 28, 2021
Length2,208,022 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N502,208,022 nt
%GC39.55%
Organism Summary
NameATCC® BAA-341™
IsolationYoung children
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS2,181
Number of Hypothetical Proteins881
Number of tRNA58
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count28,703
Oxford Nanopore Median Q Score26
Illumina Read Count12,845,293
Illumina Mean Coverage Depth804.752×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads12,845,293
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.82%
PassedEstimated genome contamination0.3%
PassedAverage depth of coverage804.752×
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