Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Level | |
|---|---|
| Date Published | January 28, 2021 |
| Length | 2,208,022 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| Assembly Summary | Complete |
| N50 | 2,208,022 nt |
| %GC | 39.55% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-341™ |
| Isolation | Young children |
| Biosafety Level | 2 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 2,181 |
| Number of Hypothetical Proteins | 881 |
| Number of tRNA | 58 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 28,703 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 12,845,293 |
| Illumina Mean Coverage Depth | 804.752× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads12,845,293
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness99.82%
PassedEstimated genome contamination0.3%
PassedAverage depth of coverage804.752×
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