ATCC® BAA-3180™ | Streptococcus pneumoniae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 31, 2023
Length	2,073,305 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (0 Circularized)
N50	2,028,307 nt
%GC	39.81%

Organism Summary
Name	ATCC® BAA-3180™
Isolation	Lower respiratory tract of a human with pneumonia
Tags
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	2060
Number of Hypothetical Proteins	180
Number of tRNA	58
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	340,099
Oxford Nanopore Median Q Score	26
Illumina Read Count	13,305,988
Illumina Mean Coverage Depth	947.496×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads13,305,988

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.76%

PassedEstimated genome contamination0.2%

PassedAverage depth of coverage947.496×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Streptococcus pneumoniae (ATCC® BAA-3180™)