ATCC® BAA-3180™ | Streptococcus pneumoniae

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-3180™
Strain Alias	Serotype 6C Isolate 7
Isolation	Lower respiratory tract of a human with pneumonia
Tags	Methylation Data
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	October 31, 2023
Length	2,073,305 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (0 Circularized)
N50	2,028,307 nt
%GC	39.81%

Annotations Summary
Number of CDS	2060
Number of Hypothetical Proteins	180
Number of tRNA	58
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	340,099
Oxford Nanopore Median Q Score	26
Illumina Read Count	13,305,988
Illumina Mean Coverage Depth	947.496×
Illumina Median Q Score	34

Most similar genomes

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	13,305,988
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.76%
Estimated genome contamination	0.2%
Average depth of coverage	947.496×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Streptococcus pneumoniae (ATCC® BAA-3180™)