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  • Streptococcus pneumoniae

Streptococcus pneumoniae (ATCC® 6305™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedOctober 30, 2019
Length2,071,148 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N502,071,148 nt
%GC39.73%
Organism Summary
NameATCC® 6305™
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS2,043
Number of Hypothetical Proteins800
Number of tRNA58
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count1,432,955
Oxford Nanopore Median Q Score25
Illumina Read Count5,526,271
Illumina Mean Coverage Depth542.848×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,526,271
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.82%
PassedEstimated genome contamination0.6%
PassedAverage depth of coverage542.848×
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