ATCC® BAA-3325™ | Streptococcus pneumoniae

Overview

Genome Browser

Related Genomes

Quality Control

Organism Summary
Catalog Number	ATCC® BAA-3325™
Isolation	Respiratory endotracheal aspirate
Tags	Methylation Data
Type Strain	No

Assembly Summary
Date Published	June 13, 2025
Length	2,106,923 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	2,106,923 nt
%GC	39.75%

Annotations Summary
Number of CDS	2102
Number of Hypothetical Proteins	191
Number of tRNA	58
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	642,994
Oxford Nanopore Median Q Score	42
Illumina Read Count	1,831,760
Illumina Mean Coverage Depth	229.682×
Illumina Median Q Score	40

Most similar genomes

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	1,831,760
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.27%
Estimated genome contamination	0.31%
Average depth of coverage	229.682×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Streptococcus pneumoniae (ATCC® BAA-3325™)