ATCC® BAA-3353™ | Streptococcus pneumoniae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	March 24, 2025
Length	2,178,029 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (0 Circularized)
N50	2,178,029 nt
%GC	39.48%

Organism Summary
Name	ATCC® BAA-3353™
Isolation	Human with community-acquired pneumonia
Tags
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	2144
Number of Hypothetical Proteins	189
Number of tRNA	58
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	65,148
Oxford Nanopore Median Q Score	34
Illumina Read Count	6,219,106
Illumina Mean Coverage Depth	751.963×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads6,219,106

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.42%

PassedEstimated genome contamination0.25%

PassedAverage depth of coverage751.963×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Streptococcus pneumoniae (ATCC® BAA-3353™)