| Stenotrophomonas acidaminiphila | Type Strain | ATCC® 700916™ | April 5, 2023 | 4.1 Mb | | |
| Stenotrophomonas acidaminiphila | | ATCC® 700917™ | December 12, 2022 | 4.0 Mb | | |
| Stenotrophomonas forensis | Type Strain | ATCC® TSD-272™ | December 12, 2022 | 4.8 Mb | | |
| Stenotrophomonas forensis | | ATCC® 17678™ | June 10, 2025 | 4.9 Mb | | |
| Stenotrophomonas hibiscicola | Type Strain | ATCC® 19867™ | December 12, 2022 | 4.4 Mb | | |
| Stenotrophomonas maltophilia | Type Strain | ATCC® 13637™ | June 14, 2019 | 5.0 Mb | | |
| Stenotrophomonas maltophilia | Type Strain | ATCC® 700475™ | April 5, 2023 | 4.6 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 17671™ | June 30, 2023 | 5.0 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 49489™ | December 12, 2022 | 4.9 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 17679™ | September 5, 2023 | 5.0 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® BAA-902™ | February 25, 2023 | 5.0 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 700269™ | July 17, 2024 | 4.4 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 49130™ | August 3, 2020 | 4.5 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 15099™ | June 30, 2023 | 5.0 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 700268™ | September 5, 2023 | 4.4 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 25596™ | June 30, 2023 | 4.8 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 53199™ | October 28, 2020 | 4.6 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 31559™ | September 5, 2023 | 4.4 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 13636™ | December 21, 2022 | 4.5 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 17666™ | June 29, 2020 | 4.9 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® BAA-84™ | November 30, 2023 | 4.8 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 53510™ | March 27, 2025 | 4.9 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® BAA-85™ | July 17, 2024 | 4.7 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 17806™ | October 2, 2023 | 4.6 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® BAA-2423™ | December 21, 2022 | 4.9 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 13270™ | September 5, 2023 | 4.2 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 43671™ | March 27, 2025 | 5.0 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 49488™ | December 12, 2022 | 4.5 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 13843™ | June 30, 2023 | 4.6 Mb | | |
| Stenotrophomonas maltophilia | | ATCC® 17677™ | September 5, 2023 | 4.8 Mb | | |